Clojurians Log v2

clj -X:deps tree https://gist.github.com/faust451/6d3a7b351136aae5992deb591f4ec6d0

That class comes from org.eclipse.jetty.toolchain/jetty-jakarta-servlet-api and that dependency is on the classpath as reported by the last command. But are you sure that the process where you see the exception is running with the same classpath? Meaning, it was restarted after any change to deps.edn, it doesn't use any aliases.

yes sure, I restarted clj -M:cider-clj:jvm-base

I'm connecting to nrepl

In the same process where the error happens, what does this output?

(->> (clojure.string/split (System/getProperty "java.class.path") #":")
     (filter #(clojure.string/includes? % "jakarta")))

/home/moon/.m2/repository/org/ring-clojure/ring-jakarta-servlet/1.12.2/ring-jakarta-servlet-1.12.2.jar

There should also be /home/moon/.m2/repository/org/eclipse/jetty/toolchain/jetty-jakarta-servlet-api/5.0.2/jetty-jakarta-servlet-api-5.0.2.jar, but it isn't, somehow. I don't have better ideas here except trying to: 1. Run clj -Sdeps '{:deps {org.eclipse.jetty.toolchain/jetty-jakarta-servlet-api {:mvn/version "5.0.2"}}}' and execute (import 'jakarta.servlet.AsyncContext) to see what happens 2. Removing .cpcache directory at the root of the project 3. Checking what's inside /home/moon/.m2/repository/org/eclipse/jetty/toolchain/jetty-jakarta-servlet-api/5.0.2/, maybe removing the whole directory

clj -Sdeps '{:deps {org.eclipse.jetty.toolchain/jetty-jakarta-servlet-api {:mvn/version "5.0.2"}}}'

user=> (import 'jakarta.servlet.AsyncContext) 
jakarta.servlet.AsyncContext

/home/moon/.m2/repository/org/eclipse/jetty/toolchain/jetty-jakarta-servlet-api/5.0.2/

is in place

after removing /home/moon/.m2/repository/org/eclipse/ and reinstall deps

ls /home/moon/.m2/repository/org/eclipse/jetty/
jetty-project/  jetty-server/  websocket/ 

What happens if you run you project not through CIDER but via plain clj?

by the way my output on starting clj looks:

clj -M:cider-clj:jvm-base
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See  for further details.
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
nREPL server started on port 43081 on host localhost - 

What happens if you run you project not through CIDER but via plain clj? Sorry, could you clarify please?

I have seen this in the past, I don't remember what it was related to 🤔

this works fine on my box :

clj -Sdeps '{:deps {ring/ring-jetty-adapter {:mvn/version "1.12.2"}}}'
user=> (require '[ring.adapter.jetty :refer [run-jetty]])

on my side:

Clojure 1.12.0
user=> (require '[ring.adapter.jetty :refer [run-jetty]])
Execution error (ClassNotFoundException) at java.net.URLClassLoader/findClass (REPL:-1).
jakarta.servlet.AsyncContext

can you paste the output of clj -Sdeps '{:deps {ring/ring-jetty-adapter {:mvn/version "1.12.2"}}}' -Spath ?

clj -X:deps tree |grep jakart
  . org.ring-clojure/ring-jakarta-servlet 1.12.2
    . org.eclipse.jetty.toolchain/jetty-jakarta-servlet-api 5.0.2
    . org.eclipse.jetty.toolchain/jetty-jakarta-servlet-api 5.0.2

ls /home/moon/.m2/repository/org/eclipse/jetty/toolchain/jetty-jakarta-servlet-api/5.0.2/

jetty-jakarta-servlet-api-5.0.2.jar       jetty-jakarta-servlet-api-5.0.2.pom       _remote.repositories
jetty-jakarta-servlet-api-5.0.2.jar.sha1  jetty-jakarta-servlet-api-5.0.2.pom.sha1

I mean the full -Spath, not the -Stree

https://gist.githubusercontent.com/faust451/5292899a5db5ee7f0fc22d1fcaa5a5ab/raw/f995d53260fba5985e7512820994422040faab8e/gistfile1.txt

oh, but looks you are running that inside a folder with a deps.edn

try on a empty folder

https://gist.githubusercontent.com/faust451/7396c71a1e677fd313420119fd793fe7/raw/38e61fd83504d2c6b794a0e6d338a2e73aa0460a/gistfile1.txt

what is the output of clj --version ?

clj --version
Clojure CLI version 1.12.0.1530

hmmm that is weird, because for some reason it is loading clojure 1.11

and also all those Warning: failed to load the S3TransporterFactory class

i think 1.12.0 version of tools, but clojure version is 1.11

yes that strange Warning: failed to load the S3TransporterFactory class

but the latest version of the cli should by default start with clojure 1.12

hm strange

so there is something weird with your clojure installation

just downloaded from https://download.clojure.org/install/

can you do a which clojure and then cat /path/to/clojure ?

which clojure
/gnu/store/59savh0mi0la9ri97cqck37drxlh9av1-profile/bin/clojure

oh you are using guix

ls -l /gnu/store/59savh0mi0la9ri97cqck37drxlh9av1-profile/bin/clojure
lrwxrwxrwx 1 root root 81 Jan  1  1970 /gnu/store/59savh0mi0la9ri97cqck37drxlh9av1-profile/bin/clojure -> /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/bin/clojure

yes guix

what does clj -Sverbose shows?

clj -Sverbose
version      = 1.12.0.1530
install_dir  = /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure
config_dir   = /home/moon/.clojure
config_paths = /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure/deps.edn /home/moon/.clojure/deps.edn deps.edn
cache_dir    = /home/moon/.clojure/.cpcache
cp_file      = /home/moon/.clojure/.cpcache/1083142194.cp

and the output of cat /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure/deps.edn

cat /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure/deps.edn 
{
  :paths ["src"]

  :deps {
    org.clojure/clojure {:mvn/version "1.12.0"}
  }

  :aliases {
    :deps {:replace-paths []
           :replace-deps {org.clojure/tools.deps.cli {:mvn/version "0.11.78"}}
           :ns-default clojure.tools.deps.cli.api
           :ns-aliases {help }}
    :test {:extra-paths ["test"]}
  }

  :mvn/repos {
    "central" {:url ""}
    "clojars" {:url ""}
  }
}

weird, it says 1.12.0 for clojure, as it should be

what is in /home/moon/.clojure/deps.edn ?

cat /home/moon/.clojure/deps.edn 
{
  :aliases {
    ;; Add cross-project aliases here
  }
}

to start with I have no idea where is the clojure 1.11 coming from

if you just do clj on an empty folder, I have :

clj
Clojure 1.12.0
user=> 

but not in my case )

clj
Clojure 1.11.1
user=> 

and what about running just clojure

clojure 
Clojure 1.11.1
user=> 

dang

what if you remove your .m2/repository/org/clojure/ folder?

and also your /home/moon/.clojure/.cpcache

just to start from zero

when you run clj, it should go and download clojure 1.12

rm -rf ~/.m2/repository/org/clojure/
moon@antelope ~/code/test [env]$ rm -rf ~/.clojure/.cpcache
moon@antelope ~/code/test [env]$ clj
Warning: failed to load the S3TransporterFactory class
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See  for further details.
Downloading: org/clojure/clojure/1.11.1/clojure-1.11.1.pom from central
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Downloading: org/clojure/core.specs.alpha/0.2.62/core.specs.alpha-0.2.62.pom from central
Downloading: org/clojure/spec.alpha/0.3.218/spec.alpha-0.3.218.pom from central
Downloading: org/clojure/pom.contrib/1.1.0/pom.contrib-1.1.0.pom from central
Downloading: org/clojure/pom.contrib/1.1.0/pom.contrib-1.1.0.pom from central
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Warning: failed to load the S3TransporterFactory class
Downloading: org/clojure/clojure/1.11.1/clojure-1.11.1.jar from central
Downloading: org/clojure/spec.alpha/0.3.218/spec.alpha-0.3.218.jar from central
Downloading: org/clojure/core.specs.alpha/0.2.62/core.specs.alpha-0.2.62.jar from central
Clojure 1.11.1
user=> 

I'm sorry guys )

haha that is so weird

yes crazy )

what about running clj -Strace

it should generate a trace.edn file

https://gist.github.com/faust451/74c3ce3ce895d4802f117475ad22cd2d

dang

and what if you run with the full path /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure

maybe there is something weird with the PATH resolution

ls /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/lib/clojure
deps.edn  example-deps.edn  libexec/  tools.edn

I mean, what happens is you run that with the full path

ls -l /gnu/store/59savh0mi0la9ri97cqck37drxlh9av1-profile/bin/clojure
lrwxrwxrwx 1 root root 81 Jan  1  1970 /gnu/store/59savh0mi0la9ri97cqck37drxlh9av1-profile/bin/clojure -> /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/bin/clojure
moon@antelope ~/code/test [env]$ /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/bin/clojure
Clojure 1.11.1
user=> 

can you paste me the contents of that file /gnu/store/d8c8vlbf3690r0p70qqinkgrfc9d4rqs-clojure-tools-1.12.0.1530/bin/clojure

https://gist.github.com/faust451/2f06ff5c5fd5d4d64f2984a3ad35a4cf

one weird thing is that our scripts are different

might be something wrong with the package definition there is no package in guix for latest clojure-tools so i changed abit the definition of existing package

(define clojure-tools
  (package
    (inherit clj:clojure-tools)
    (version "1.12.0.1530")
    (source (origin
              (method url-fetch)
              (uri (string-append ""
				  version
				  ".tar.gz"))
              (sha256 (base32 "0jgd0lki1mml7ppccxnbhj9jbpy5cy3s11775p9kkfi6h654pwhg"))))))

just changed version

oh, so that is probably it

but not sure what that inherit does

I never used guix

just inherit all properties from old package

and what are those?

https://gist.github.com/faust451/ca73af41a59b542119afc19ac1dbbbb3

because for example, the clojure script I'm using has a line inside that defines the tools classpath :

...
tools_cp="$install_dir/libexec/clojure-tools-$version.jar"
...

and yours has a bunch of jars but no even a reference to clojure-tools

if I'm installing via

sudo ./linux-install.sh --prefix /opt/infrastructure/clojure

~/code/tools/clojure/bin/clojure 
Error: Could not find or load main class clojure.main
Caused by: java.lang.ClassNotFoundException: clojure.main

how I can work around?

but what if you run /opt/infrastructure/clojure/bin/clojure

oh sorry

sudo ./linux-install.sh --prefix ~/code/tools/clojure

I'm not following, you are installing it to /opt/infrastructure but then running it from some other place

oh ok I see

and what now?

moon@antelope ~/code/tools [env]$ clojure/bin/clojure 
Clojure 1.12.0
user=> 

but if I change dir

moon@antelope ~/code/test [env]$ ~/code/tools/clojure/bin/clojure 
Error: Could not find or load main class clojure.main
Caused by: java.lang.ClassNotFoundException: clojure.main

yeah, that is probably because of the line 5 of the clojure script

which contains a relative path

when you install with prefix

you can change that to an absolute path of ~/code/tools/clojure/

Cool! it works now )

Thank you a lot for help!!

hey you are welcome. I'm not sure what is going on with the other installation method

I'm going to use clj tools form ./linux-install.sh

I've always installed from that linux-install.sh

now i can load without any issues )

[ring.adapter.jetty :refer [run-jetty]

sorry for taking so much time

Huh, it seems that soon comes the time when one of the first questions asked in similar situations should be "are you using guix/nix?". :)

That S3Transporter warning generally indicates you're running tools.deps from a git dep or source, without the Java classes compiled -- which tracks with the weird "bunch of jars" in the script instead of the full uberjar of clojure-tools. I suspect this harks back to these *nix packager folks obsession with trying to build everything from source (and clearly getting something wrong here).